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Journal papers

H. F. Choi, A. Chincisan, M. Becker, N. Magnenat-Thalmann, "Multimodal composition of the digital patient: a strategy for the knee articulation". The Visual Computer, Volume 30, Number 6-8, Pages 739-749, 2014

G. Patanè, M. Spagnuolo, Local Approximation of Scalar Functions on 3D Shapes and Volumetric Data. Computer&Graphics 2012. Volume 36, Issue 5, August 2012, Pages 387–397.

Millán Vaquero R, Vais A, Dean Lynch S, Rzepecki J, Friese KI, Hurschler C, Wolter FE, Helical Axis Data Visualization and Analysis of the Knee Joint Articulation. ASME. J Biomech Eng.2016;138(9):094501-094501-9. doi:10.1115/1.4034005.

Book Chapters

Nadia Magnenat Thalmann, Hon Fai Choi and Daniel Thalmann, “Towards Effective Diagnosis  and Prediction via 3D Patient Model: A Complete Research Plan”, 3D Multiscale  Physiological Human  

Ibrahim Fatih Cengiz, Joaquim Miguel Oliveira and Rui Luís Reis, “Tissue Engineering and  Regenerative Medicine Strategies for the Treatment of Osteochondral Lesions”, 3D Multiscale  Physiological Human book 

David García Juan, Sara Trombella and Osman Ratib, “Hybrid Imaging: From Anatomy to  Function”, 3D Multiscale  Physiological Human  

Matthias Becker and Nadia Magnenat-Thalmann, “Deformable Models in Medical Image Segmentation”, 3D Multiscale  Physiological Human  

Ricardo Manuel Millán Vaquero, Jan Rzepecki, Karl-Ingo Friese and Franz-Erich Wolter, “Visualization and User Interaction Methods for MultiscaleBiomedical Data”, 3D Multiscale  Physiological Human  

Karelia Tecante, Frank Seehaus, Bastian Welke, Gavin Olender, Michael Schwarze, Sean Lynch  and Christoph Hurschler, “Clinical Gait Analysis and Musculoskeletal Modeling”, 3D Multiscale  Physiological Human  

Lazhari Assassi and Nadia Magnenat-Thalmann, “A Biomechanical Approach for Dynamic Hip  Joint Analysis”, 3D Multiscale  Physiological Human  

Patrizia Parascandolo, Lorenzo Cesario, Loris Vosilla and Gianni Viano, “Computer Aided  Diagnosis: State-of-the-Art and Application to Musculoskeletal Diseases”, 3D Multiscale  Physiological Human  

Imon Banerjee, Chiara Eva Catalano, Francesco Robbiano and Michela Spagnuolo, “Accessing  and Representing Knowledge in the Medical Field: Visual and Lexical Modalities”, 3D Multiscale  Physiological Human  

Conference papers   

R. Millan Vaquero, S. Lynch, B. Fleischer, J. Rzepecki, K.-I. Friese , C. Hurschler, F.-E. Wolter, Enhanced visualization of knee joint functional articulation based on helical axis method.  In: Bildverarbeitung für die Medizin 2015, Informatik aktuell 2015, pp 449-454, Springer, 2015.

J. Rzepecki, R. Millan Vaquero,  K.-I. Friese,  F.-E. Wolter, Multimodal  Approach  for  Natural Biomedical Multi-scale Exploration, In: Advances in Visual Computing: 10th International Symposium on Visual Computing, pp. 620-631, Springer, 2015.

M. Becker, N. Magnenat-Thalmann, Muscle Tissue Labeling of Human Lower Extremities in Multi-Channel mDixon MR Imaging: Concepts and Applications, IEEE BIBm, November, 2014.

H.F. Choi, A. Chincisan, N. Magnenat-Thalmann, A collective approach for the reconstruction of 3D fiber bundle arrangements in virtual musculoskeletal soft tissue models, Computational Biomechanics for Medicine IX workshop- MICCAI , September 14, USA, Boston, 2014. 

I.F. Cengiz, H. Pereira, Espregueira-Mendes, J.M. Pego, J.M. Oliveira, R.L. Reis, 3D cellularity within the human knee meniscus, TERMIS EU, Genoa, Italy, 10-13 June 2014

M. Ondrésik, C. Correia, R.A. Sousa, J.M. Oliveira, R.L. Reis, Understanding cellular behaviour in early and late stage of MSD, TERMIS EU, Genoa, Italy, 10-13 June 2014

A. Agibetov, R. M. Millán Vaquero, K.I. Friese, G. Patanè, M. Spagnuolo, and F.E. Wolter, Integrated Visualization and Analysis of a Multi-scale Biomedical Knowledge Space, Eurographics Conference on Visualization (EuroVis), Workshop on Visual Analytics, 9-13 June  2014.

A. Chincisan, H.F. Choi, L. Assassi, S. Lynch, C. Hurschler, N. Magnenat-Thalmann, Subject-Specific Assessment of Loading Variation in the Knee Ligaments with a View to Preoperative Planning, IEEE BHI, Valencia, Spain, June 1-4, 2014.

D. García Juan, S. Trombella, B.M.A. Delattre, Y. Seimbille, O. Ratib, Study of skeletal muscle behavior by PET/MRI, IEEE BHI, Valencia, Spain, June 1-4, 2014.

M. Pitikakis, I. Banerjee, Knowledge management in medicine: a framework to organize, browse and retrieve medical data. 7th International Conference on Health Informatics (HEALTHINF 2014), Angers, France, March 3-6, 2014. 

D. G. Juan, B. M. A. Delattre, S. Trombella, S. Lynch, M. Becker, H. F. Choi, and O. Ratib, Open framework for management and processing of multi-modality and multidimensional imaging data for analysis and modelling muscular function, SPIE, San Diego, California, USA , February 15, 2014.

P. Parascandolo, L. Cesario, L. Vosilla, M. Pitikakis, G. Viano, Smart Brush: a real time segmentation tool for 3D medical images. In Proc: 8th International Symposium on Image and Signal Processing and Analysis (ISPA 2013), Trieste, Italy, Sept. 4-6, 2013, pp 683-689.

G. Patanè, M. Spagnuolo, Computational Methods for 3D Shape Modelling and Analysis in the Context of the Virtual Physiological Human. 3D Physiological Human (3DPH) Workshop 25th Annual Conference on Computer Animation and Social Agents (CASA 2012) May 9-11, 2012 Nanyang Technological University, Singapore.

C. Catalano, F. Robbiano, P. Parascandolo, L. Cesario, L. Vosilla, F. Barbieri, M. Spagnuolo, G. Viano, M. Cimmino, Exploiting 3D part-based analysis, description and indexing to support medical applications. MCBR-CDS 2012: Medical Content-based Retrieval for Clinical Decision Support; October 1st, 2012. Nice, France.

Invited talks

A. Agibetov, Collaborative knowledge formalization and visualization: detecting similarities and changes, Festival della Scienza 2014 – Conference: Multi-scale Human Body Modelling: from Static to Time-Varying Data and Knowledge Processing, October 24, 2014, Genoa, Italy. 

I. Banerjee, Semantic-annotation for the documentation of follow-up data, Festival della Scienza 2014 – Conference: Multi-scale Human Body Modelling: from Static to Time-Varying Data and Knowledge Processing, October 24, 2014, Genoa, Italy. 

S. Trombella, Visualization of the human body and clinical pathologies. Evolution of medical imaging techniques, Festival della Scienza 2014 – Conference: Multi-scale Human Body Modelling: from Static to Time-Varying Data and Knowledge Processing, October 24, 2014, Genoa, Italy. 

A. Chincisan, Multimodal and multi-scale modelling of the knee articulation, Festival della Scienza 2014 – Conference: Multi-scale Human Body Modelling: from Static to Time-Varying Data and Knowledge Processing, October 24, 2014, Genoa, Italy. 

M. Pitikakis, The importance of monitoring (follow-up) in rheumatoid arthritis diagnosis and treatment on the wrist, using the RheumaSCORE software, Festival della Scienza 2014 – Conference: Multi-scale Human Body Modelling: from Static to Time-Varying Data and Knowledge Processing, October 24, 2014, Genoa, Italy. 

N. Magnenat-Thalmann, The digital Patient: from the modelling to the simulation of patient specific articulations, CGI 2014, June 11, 2014, Sydney, Australia.  

F.E. Wolter, Visualization Understanding of and Interaction with Medical and Scientific Data, Multi-scale Biological Modalities for Physiological Human Articulations workshop, CGI 2014, June 11, 2014, Sydney, Australia. 

M. Becker, Anatomical modelling for the multi-scale human, Multi-scale Biological Modalities for Physiological Human Articulations workshop, CGI 2014, June 11, 2014, Sydney, Australia.  

H.F. Choi, Modeling fiber anisotropy in multiscale musculoskeletal soft tissues, Multi-scale Biological Modalities for Physiological Human Articulations workshop, CGI 2014, June 11, 2014, Sydney, Australia.  

A. Chincisan, Multimodal and multiscale modeling of the human knee articulation, Multi-scale Biological Modalities for Physiological Human Articulations workshop, CGI 2014, June 11, 2014, Sydney, Australia. 

J. Rzepecki, Visualization and Interaction Approach for Multi-scale environments. Invited talk at the 4th AMI-4Europe Conference, BIOTECNICA, October 9, 2014, Messegelände Hannover, Hannover, Germany.

K. Tecante, Gait Biomechanics - Information from walking patterns. Invited talk at the ESRs Seminar, July 17-18, 2013, Hannover, Germany.

A. Chincisan, How we improve the life of professional artists and athletes using 3D simulations. Invited talk at the ESRs Seminar, July 17-18, 2013, Hannover, Germany. 

S. Trombella, Molecular imaging: from animal to human. Invited talk at the ESRs Seminar, July 17-18, 2013, Hannover, Germany.

M.  Ondresik, Tissue engineering: How to build parts of the body. Invited talk at the ESRs Seminar, July 17-18, 2013, Hannover, Germany.

N. Magnenat-Thalmann, Modelling Multiscale Human: A Marie Curie European Project. Invited talk at International Conference on Wireless Algorithms, Systems, and Applications WASA2012, November 27, 2012, Singapore.

N. Magnenat-Thalmann,  The 3D Patient: A Study of the Lower Leg. Invited talk at Workshop on 3D Virtual Patients, Nanyang Technological University, November 5, 2012, Singapore.

N. Magnenat-Thalmann, The 3D Virtual Patient. Invited talk at Graduate School of Computer Technology, KAIST, November 1, 2012, Korea. 

N. Magnenat-Thalmann, Digital Atlases of The Human Body. Invited talk at Festival Della Scienza Bellezza, October 26, 2012, Genova, Italy. 

K. Tecante, A Novel Approach to Quantify Dynamic Variability Du ring Walking in dual task Situations. Invited talk at GAMMA-Symposium,October 19-20, 2012, Hannover, Germany. 

S. Lynch, Multi Scale Human- Marie Curie Initial Training Network (ITN - Call: FP7-People-2011 -ITN). Invited talk at GAMMA-Symposium,October 19-20, 2012, Hannover, Germany.

G. Patanè, Surface- and volume-based analysis of 3D shapes. Invited talk at the 3D Geometry and Image Conference, July, 19-21, 2012, Kunming, China.

G. Patanè, 3D Shape Modelling and Analysis Through Functional and Metric Spaces. 3-D Geometry/Imaging Summer School July 16-August 3, 2012 Kunming University of Science and Technology, Yunnan, China.

N. Magnenat-Thalmann, "Should I Stay or Should I Go?". Invited talk at Marie Curie Actions shaping the European Research and Innovation Landscape, July 3-4, 2012, Flagey Theatre, Brussels, Belgium.  

C. Hurschler, F. Seehaus, B. Welke, G. Olender and M. Schwarze, Clinical Gait Analysis –State of the Art Illustrated through the Analysis of Subject Simulated Falls with a Transcutaneous Osseointegrated Prosthesis for Transfemoral Amputees. Invited talk at CASA2012: 25th Annual Conference on Computer Animation and Social Agents, June 9-11, 2012, Singapore. 

B. Fleischer, K.I. Friese, F.E. Wolter, G. Olender, C. Becher and C. Hurschler, Automatic Evaluation of Human Knee Joint Kinematics based on MRI Images. Invited talk at CASA2012: 25th Annual Conference on Computer Animation and Social Agents, June 9-11, 2012, Singapore.

N. Magnenat-Thalmann, The Physiological Virtual Human. Keynote speech at Graphics Interface 2012, May 28-30, 2012, Toronto, Ontario, Canada.

G. Patanè, D. X. Gu, X. S. Li, M. Spagnuolo, Surface-, Flow-, and Volume-Based Techniques for Shape Modelling. Course presented at Shape Modelling International 2012. May 22-25 2012, College Station, Texas (SA).

N. Magnenat-Thalmann, The Physiological Human: A Challenge for the 21st Century. Invited talk at Workshop on Interactive Digital Media, Nanyang Technological University, March 12-13, 2012, Singapore.

N. Magnenat-Thalmann, Videocapturing for Medical Applications. Invited talk at Ritsumeikan University, January 21, 2012 ,  Japan.

Related publications in Journals 

V.B. Duthon, C. Charbonnier, F.C. Kolo, N. Magnenat-Thalmann, C.D. Becker, C. Bouvet, E. Coppens, P. Hoffmeyer and J. Menetrey, Correlation of Clinical and Magnetic Resonance Imaging Findings in Hips of Elite Female Ballet Dancers, Arthroscopy The Journal of Arthroscopic and Related Surgery (impact factor: 3.02), DOI:10.1016, 18 January 2013.

F.C. Kolo, C. Charbonnier, C.W.A. Pfirrmann, S.R. Duc, A. Lubbeke, V.B. Duthon, N. Magnenat-Thalmann, P. Hoffmeyer, J. Menetrey and C.D. Becker, Extreme Hip Motion in Professional Ballet Dancers: Dynamic and Morphological Evaluation Based on Magnetic Resonance Imaging, Department of Radiology, University Hospital of Geneva, Skeletal Radiology (impact factor: 1.54), DOI:10.1007/s00256-012-1544-9, November 2012 .

E. Arbabi, J.Schmid, R.Boulic, D.Thalmann, N. Magnenat-Thalmann, Sensitivity of Hip Tissues Contact Evaluation to the Methods used for Estimating the Hip Joint Center of Rotation, Journal of Medical & Biological Engineering & Computing, 2012.

C. Charbonnier, F.C. Kolo, V.B. Duthon and N. Magnenat-Thalmann, C.D. Becker, P. Hoffmeyer and J. Menetrey, Semi-Supervised Biased Maximum Margin Analysis for SVM Relevance Feedback in Image Retrieval, IEEE Transactions on Image Processing, 2011.

L. Assassi and N. Magnenat-Thalmann, Biomechanical Analysis of the Human Hip Joint During Extreme Movements, Computer Assisted Radiology and Surgery (CARS2012), Pisa, Italy, June 2012.

Z.P. Bian, L.P. Chau and N. Magnenat-Thalmann , A Depth Video Approach for Fall Detection Based on Human Joints Height and Falling Velocity, Proceedings of the 25th Annual Conference on Computer Animation and Social Agents, Wiley, May, 2012.

Related publications in Proceedings

B. Zhenpeng, C. Lap-Pui and N. Magnenat-Thalmann, A Depth Video Approach for Fall Detection Based on Human Joins Height and Falling Velocity, Proceedings of the 25th Annual Conference on Computer Animation and Social Agents (CASA 2012), Singapore, May 9-11, 2012.

L. Assassi and N. Magnenat-Thalmann, Biomechanical Modeling of the Human Articulation for Osteoarthritis Analysis, Computer Methods in Biomechanics and Biomedical Engineering (CMBBE2012), Berlin, Germany, pp. 573-578, April 2012.

Awards 

Best paper award: M. Becker, N. Magnenat-Thalmann, "Muscle Tissue Labeling of Human Lower Extremities in Multi-Channel mDixon MR Imaging: Concepts and Applications", IEEE BIBm 2014

Best paper award: H.F. Choi, A. Chincisan, N. Magnenat-Thalmann, A collective method for the reconstruction of 3D fiber bundle arrangements in virtual musculoskeletal soft tissue models, Computational Biomechanics for Medicine IX workshop- MICCAI , September 14, USA, Boston, 2014

Franz-Erich Wolter: 2014 CGI Career Award, Computer Graphics International 2014, Australia, 2014 (http://sydney.edu.au/engineering/it/~cgi14/welcome/highlights.php)

N. Magnenat-Thalmann: 2013 CGI Achievement Award Computer Graphics International 2013, Germany, 2013 (http://cgi2013.welfenlab.de/)

N. Magnenat-Thalmann: 2012 Humboldt Research Award Alexander von Humboldt Foundation, Germany, 2012(http://imi.ntu.edu.sg/AboutIMI/DirectorOfIMI/Documents/Prix_Humboldt.pdf)

N. Magnenat-Thalmann: 2012 The Canadian Human Computer Communications Society Achievement Award, Canadian Human Computer Communications Society, Canada, 2012
(http://www.cs.ubc.ca/~ksbooth/gi/archive/achvmnt2012-en.html)